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| AAA | Archives of American Art |
| AAD | Access to Archival Databases |
| AAPC | Accounting and Auditing Policy Committee |
| AAS | Office of Airport Safety and Standards |
| ABMC | American Battle Monuments Commission |
| ABPP | American Battlefield Protection Program |
| ACC | Air Combat Command |
| ACD | Advanced Counterfeit Deterrence |
| ACDA | United States Arms Control and Disarmament Agency |
| ACE | Automated Commerical Environment |
| ACES | Active Community Environments Initiative |
| ACF | Administration for Children and Families |
| ACFR | Administrative Committee of the Federal Register |
| ACHP | Advisory Council on Historic Preservation |
| AcqNet | Acquisition Central |
| ACQWeb | Office of the Under Secretary of Defense for Acquisition and Technology |
| ACS | Office of American Citizens Services and Crisis Management |
| ACSFA | Advisory Committee on Student Financial Assistance |
| ACSL | Alternate Crops and Systems Lab (changed to CSGCL) |
| ACYF | Administration for Children, Youth, and Families |
| ADA | Americans with Disabilities Act (Text of ADA legislation) |
| ADC | Program Against Digital Counterfeiting of Currency (changed to ACD) |
| ADD | Administration on Developmental Disabilities |
| ADDS | Aviation Digital Data Service |
| ADF | African Development Foundation |
| ADR | Alternative Dispute Resolution |
| AES | Automated Export System |
| AFC | American Folklife Center |
| AFCARS | Adoption and Foster Care Reporting and Analysis System |
| AFDC | Aid to Families with Dependent Children (defunct; see history) |
| AFI | Assets for Independence Program |
| AFIS | American Forces Information Service |
| AFMLS | Asset Forfeiture and Money Laundering Section |
| AFP | Asset Forfeiture Program |
| AFRC | Air Force Reserve Command |
| AFRH | Armed Forces Retirement Home |
| AFRL | Air Force Research Laboratory |
| AFROTC | Air Force Reserve Officer Training Corps |
| AFRRI | Armed Forces Radiobiology Research Institute |
| AFRTS | Armed Forces Radio and Television Service |
| AFS | Air Facility System |
| AFSC | Armed Forces Staff College (replaced by JFSC) |
| AFSIC | Alternative Farming Systems Information Center |
| AFSPC | Air Force Space Command |
| AGC | Army Geospatial Center |
| AGDC | Alaska Geospatial Data Clearinhouse |
| AGID | AGing Integrated Database |
| AGRICOLA | Agricultural OnLine Access |
| AHCPR | Agency for Health Care Policy and Research (changed to AHRQ) |
| AHRQ | Agency for Healthcare Research and Quality |
| AHS | American Housing Survey |
| AID | Agency for International Development |
| AILO | American Indian Liaison Office |
| AIRS | Aerometric Information Retrieval System (changed to AFS) |
| AMES | Ames Laboratory |
| AML | Abandoned Mine Lands |
| AMS | Agricultural Marketing Service |
| AMTIC | Ambient Monitoring Technology Information Center |
| Amtrak | National Railroad Passenger Corporation |
| ANA | Administration for Native Americans |
| ANG | Air National Guard |
| ANL | Argonne National Laboratory |
| AO | Administrative Office of U.S. Courts |
| AOA | Administration on Aging |
| AOC | Architect of the Capitol |
| AOML | Atlantic Oceanographic and Meteorological Laboratory |
| AOTUS | Archivist of the United States |
| APH | American Printing House for the Blind |
| APHIS | Animal and Plant Health Inspection Service |
| APIS | Advanced Passenger Information System |
| APLAA | Office of Asian Pacific, Latin American, and African Analysis |
| APP | Office of Airport Planning and Programming |
| AQA | Air Quality Analysis |
| AQS | Air Quality System |
| ARB | Administrative Review Board |
| ARBA | Army Review Boards Agency |
| ARC | Appalachian Regional Commission | Archival Research Catalog | Arctic Research Commission |
| ARIS | Air Resources Information System |
| ARL | Air Resources Laboratory | Army Research Laboratory |
| ARM | Atmospheric Radiation Measurement |
| ARNet | Acquisition Reform Network (changed to AcqNet) |
| ARPA | Advanced Research Projects Agency |
| ARPA-E | Advanced Research Projects Agency-Energy |
| ARRA | American Recovery and Reinvestment Act |
| ARS | Agricultural Research Service |
| ASC | Appraisal Subcommittee |
| ASL | Assistant Secretary for Legislation |
| ASPE | Assistant Secretary for Planning and Evaluation |
| ASPR | Assistant Secretary for Preparedness and Response |
| ATF | Bureau of Alcohol, Tobacco, Firearms & Explosives |
| ATFE | Bureau of Alcohol, Tobacco, Firearms & Explosives |
| ATFP | Antiterrorism/Force Protection Directorate |
| ATIP | Anti-Trafficking in Persons |
| ATO | Air Traffic Organization |
| ATP | Advanced Technology Program |
| ATS | Automated Targeting System |
| ATSDR | Agency for Toxic Substances and Disease Registry |
| ATUS | American Time Use Study |
| ATW | Air Toxics Web Site |
| AWC | Aviation Weather Center |
| AWIC | Animal Welfare Information Center | | | |
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